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» Optimal neighborhood indexing for protein similarity search
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LION
2009
Springer
114views Optimization» more  LION 2009»
14 years 2 months ago
Substitution Matrices and Mutual Information Approaches to Modeling Evolution
Abstract. Substitution matrices are at the heart of Bioinformatics: sequence alignment, database search, phylogenetic inference, protein family classication are based on Blosum, P...
Stephan Kitchovitch, Yuedong Song, Richard C. van ...
ICML
2004
IEEE
14 years 8 months ago
Training conditional random fields via gradient tree boosting
Conditional Random Fields (CRFs; Lafferty, McCallum, & Pereira, 2001) provide a flexible and powerful model for learning to assign labels to elements of sequences in such appl...
Thomas G. Dietterich, Adam Ashenfelter, Yaroslav B...
SIGCOMM
1997
ACM
13 years 11 months ago
Scalable High Speed IP Routing Lookups
Internet address lookup is a challenging problem because of increasing routing table sizes, increased traffic, higher speed links, and the migration to 128 bit IPv6 addresses. IP...
Marcel Waldvogel, George Varghese, Jonathan S. Tur...
SIGMOD
2012
ACM
253views Database» more  SIGMOD 2012»
11 years 10 months ago
Skew-aware automatic database partitioning in shared-nothing, parallel OLTP systems
The advent of affordable, shared-nothing computing systems portends a new class of parallel database management systems (DBMS) for on-line transaction processing (OLTP) applicatio...
Andrew Pavlo, Carlo Curino, Stanley B. Zdonik
FOCS
2009
IEEE
13 years 11 months ago
Space-Efficient Framework for Top-k String Retrieval Problems
Given a set D = {d1, d2, ..., dD} of D strings of total length n, our task is to report the "most relevant" strings for a given query pattern P. This involves somewhat mo...
Wing-Kai Hon, Rahul Shah, Jeffrey Scott Vitter