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ALGORITHMICA
1999
87views more  ALGORITHMICA 1999»
13 years 9 months ago
The Performance of Neighbor-Joining Methods of Phylogenetic Reconstruction
We analyze the performance of the popular class of neighbor-joining methods of phylogeny reconstruction. In particular, we find conditions under which these methods will determine ...
Kevin Atteson
CIBCB
2005
IEEE
14 years 3 months ago
Cooperative Rec-I-DCM3: A Population-Based Approach for Reconstructing Phylogenies
Abstract— In this paper, we study the use of cooperation as a technique for designing faster algorithms for reconstructing phylogenetic trees. Our focus is on the use of cooperat...
Tiffani Williams, Marc Smith
RSA
2010
98views more  RSA 2010»
13 years 8 months ago
Network delay inference from additive metrics
We demonstrate the use of computational phylogenetic techniques to solve a central problem in inferential network monitoring. More precisely, we design a novel algorithm for multi...
Shankar Bhamidi, Ram Rajagopal, Sébastien R...
IPPS
2006
IEEE
14 years 3 months ago
Parallel multiple sequence alignment with local phylogeny search by simulated annealing
The problem of multiple sequence alignment is one of the most important problems in computational biology. In this paper we present a new method that simultaneously performs multi...
Jaroslaw Zola, Denis Trystram, Andrei Tchernykh, C...
ALIFE
2004
13 years 9 months ago
Using Avida to Test the Effects of Natural Selection on Phylogenetic Reconstruction Methods
Phylogenetic trees group organisms by their ancestral relationships. There are a number of distinct algorithms used to reconstruct these trees from molecular sequence data, but dif...
George I. Hagstrom, Dehua H. Hang, Charles Ofria, ...