36 search results - page 2 / 8 » Optimal spliced alignments of short sequence reads |
BIBE
2007
IEEE
14 years 1 months ago
2007
IEEE
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
BMCBI
2005
13 years 7 months ago
2005
Background: Alignments of homologous DNA sequences are crucial for comparative genomics and phylogenetic analysis. However, multiple alignment represents a computationally difficu...
BMCBI
2010
13 years 7 months ago
2010
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
SIGMOD
2011
ACM
12 years 10 months ago
2011
ACM
Over the last decade the cost of producing genomic sequences has dropped dramatically due to the current so called “next-gen” sequencing methods. However, these next-gen seque...
LATA
2010
Springer
14 years 17 days ago
2010
Springer
With the advent of new sequencing technologies able to produce an enormous quantity of short genomic sequences, new tools able to search for them inside a references sequence genom...