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» Optimization of Sequence Queries in Database Systems
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BMCBI
2005
130views more  BMCBI 2005»
15 years 3 months ago
Squid - a simple bioinformatics grid
Background: BLAST is a widely used genetic research tool for analysis of similarity between nucleotide and protein sequences. This paper presents a software application entitled &...
Paulo C. Carvalho, Rafael V. Glória, Antoni...
BMCBI
2010
150views more  BMCBI 2010»
15 years 3 months ago
AMS 3.0: prediction of post-translational modifications
Background: We present here the recent update of AMS algorithm for identification of post-translational modification (PTM) sites in proteins based only on sequence information, us...
Subhadip Basu, Dariusz Plewczynski
DKE
2007
119views more  DKE 2007»
15 years 3 months ago
Error minimization in approximate range aggregates
Histogram techniques have been used in many commercial database management systems to estimate a query result size. Recently, it has been shown that they are very effective to su...
Xuemin Lin, Qing Zhang, Yidong Yuan, Qing Liu
160
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ISMB
1996
15 years 4 months ago
Finding Genes in DNA Using Decision Trees and Dynamic Programming
This study demonstratesthe use of decision tree classifiers as the basis for a general gene-finding system. The system uses a dynamic programmingalgorithm that. finds the optimal ...
Steven Salzberg, Xin Chen, John Henderson, Kenneth...
SIGMOD
2006
ACM
122views Database» more  SIGMOD 2006»
16 years 3 months ago
MonetDB/XQuery: a fast XQuery processor powered by a relational engine
Relational XQuery systems try to re-use mature relational data management infrastructures to create fast and scalable XML database technology. This paper describes the main featur...
Peter A. Boncz, Torsten Grust, Maurice van Keulen,...