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» Optimization of Sequence Queries in Database Systems
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BMCBI
2005
130views more  BMCBI 2005»
13 years 8 months ago
Squid - a simple bioinformatics grid
Background: BLAST is a widely used genetic research tool for analysis of similarity between nucleotide and protein sequences. This paper presents a software application entitled &...
Paulo C. Carvalho, Rafael V. Glória, Antoni...
BMCBI
2010
150views more  BMCBI 2010»
13 years 8 months ago
AMS 3.0: prediction of post-translational modifications
Background: We present here the recent update of AMS algorithm for identification of post-translational modification (PTM) sites in proteins based only on sequence information, us...
Subhadip Basu, Dariusz Plewczynski
DKE
2007
119views more  DKE 2007»
13 years 8 months ago
Error minimization in approximate range aggregates
Histogram techniques have been used in many commercial database management systems to estimate a query result size. Recently, it has been shown that they are very effective to su...
Xuemin Lin, Qing Zhang, Yidong Yuan, Qing Liu
ISMB
1996
13 years 10 months ago
Finding Genes in DNA Using Decision Trees and Dynamic Programming
This study demonstratesthe use of decision tree classifiers as the basis for a general gene-finding system. The system uses a dynamic programmingalgorithm that. finds the optimal ...
Steven Salzberg, Xin Chen, John Henderson, Kenneth...
SIGMOD
2006
ACM
122views Database» more  SIGMOD 2006»
14 years 8 months ago
MonetDB/XQuery: a fast XQuery processor powered by a relational engine
Relational XQuery systems try to re-use mature relational data management infrastructures to create fast and scalable XML database technology. This paper describes the main featur...
Peter A. Boncz, Torsten Grust, Maurice van Keulen,...