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TC
2010
13 years 5 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
GECCO
2008
Springer
145views Optimization» more  GECCO 2008»
13 years 8 months ago
Memory with memory: soft assignment in genetic programming
Based in part on observations about the incremental nature of most state changes in biological systems, we introduce the idea of Memory with Memory in Genetic Programming (GP), wh...
Nicholas Freitag McPhee, Riccardo Poli
ICDCS
2000
IEEE
13 years 12 months ago
An Adaptive, Perception-Driven Error Spreading Scheme in Continuous Media Streaming
For transmission of continuous media (CM) streams such as audio and video over the Internet, a critical issue is that periodic network overloads cause bursty packet losses. Studie...
Srivatsan Varadarajan, Hung Q. Ngo, Jaideep Srivas...
SAC
2005
ACM
14 years 1 months ago
Dynamic group communication in mobile peer-to-peer environments
This paper presents an approach to integrate publish/subscribe semantics with on-demand multicast in wireless ad hoc networks, providing dynamic group communication with fine-gra...
Eiko Yoneki, Jean Bacon
IPPS
2003
IEEE
14 years 22 days ago
Phylogenetic Tree Inference on PC Architectures with AxML/PAxML
Inference of phylogenetic trees comprising hundreds or even thousands of organisms based on the maximum likelihood method is computationally extremely expensive. In previous work,...
Alexandros Stamatakis, Thomas Ludwig 0002