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» Optimizing Write Performance for Read Optimized Databases
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RTDB
1996
84views more  RTDB 1996»
13 years 9 months ago
Performance-Polymorphic Execution of Real-Time Queries
We are developing an object-oriented real-time database system that includes a relationally complete query language. Unlike conventional query optimizers, our optimizer estimates ...
Thomas Padron-McCarthy, Tore Risch
EDBT
2008
ACM
150views Database» more  EDBT 2008»
14 years 7 months ago
Cost-based query optimization for complex pattern mining on multiple databases
For complex data mining queries, query optimization issues arise, similar to those for the traditional database queries. However, few works have applied the cost-based query optim...
Ruoming Jin, David Fuhry, Abdulkareem Alali
BMCBI
2011
12 years 11 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
IDEAS
2010
IEEE
238views Database» more  IDEAS 2010»
13 years 6 months ago
An integrative approach to query optimization in native XML database management systems
Even though an effective cost-based query optimizer is of utmost importance for the efficient evaluation of XQuery expressions in native XML database systems, such a component is...
Andreas M. Weiner, Theo Härder
WABI
2009
Springer
132views Bioinformatics» more  WABI 2009»
14 years 2 months ago
mpscan: Fast Localisation of Multiple Reads in Genomes
Abstract. With Next Generation Sequencers, sequence based transcriptomic or epigenomic assays yield millions of short sequence reads that need to be mapped back on a reference geno...
Eric Rivals, Leena Salmela, Petteri Kiiskinen, Pet...