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» Optimizing the Use of High Performance Software Libraries
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BMCBI
2008
116views more  BMCBI 2008»
13 years 7 months ago
GBParsy: A GenBank flatfile parser library with high speed
Background: GenBank flatfile (GBF) format is one of the most popular sequence file formats because of its detailed sequence features and ease of readability. To use the data in th...
Tae-Ho Lee, Yeon-Ki Kim, Baek Hie Nahm
FPL
2006
Springer
85views Hardware» more  FPL 2006»
13 years 11 months ago
High-Performance and Parameterized Matrix Factorization on FPGAs
FPGAs have become an attractive choice for scientific computing. In this paper, we propose a high performance design for LU decomposition, a key kernel in many scientific and engi...
Ling Zhuo, Viktor K. Prasanna
EUROPAR
1999
Springer
13 years 11 months ago
An Evaluation of High Performance Fortran Compilers Using the HPFBench Benchmark Suite
Abstract. The High Performance Fortran (HPF) benchmark suite HPFBench was designed for evaluating the HPF language and compilers on scalable architectures. The functionality of the...
Guohua Jin, Y. Charlie Hu
IPPS
2008
IEEE
14 years 1 months ago
High performance MPEG-2 software decoder on the cell broadband engine
The Sony-Toshiba-IBM Cell Broadband Engine is a heterogeneous multicore architecture that consists of a traditional microprocessor (PPE) with eight SIMD coprocessing units (SPEs) ...
David A. Bader, Sulabh Patel
SC
2000
ACM
13 years 11 months ago
High Performance Reactive Fluid Flow Simulations Using Adaptive Mesh Refinement on Thousands of Processors
We present simulations and performance results of nuclear burning fronts in supernovae on the largest domain and at the finest spatial resolution studied to date. These simulation...
A. C. Calder, Bruce C. Curtis, L. J. Dursi, Bruce ...