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» Overestimation for Multiple Sequence Alignment
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BMCBI
2006
96views more  BMCBI 2006»
13 years 7 months ago
Structure alignment based on coding of local geometric measures
Background: A structure alignment method based on a local geometric property is presented and its performance is tested in pairwise and multiple structure alignments. In this appr...
Peter L. Chang, Andrew W. Rinne, T. Gregory Dewey
BMCBI
2010
154views more  BMCBI 2010»
13 years 7 months ago
Fine-tuning structural RNA alignments in the twilight zone
Background: A widely used method to find conserved secondary structure in RNA is to first construct a multiple sequence alignment, and then fold the alignment, optimizing a score ...
Andreas Bremges, Stefanie Schirmer, Robert Giegeri...
ISMIR
2005
Springer
141views Music» more  ISMIR 2005»
14 years 1 months ago
Multiple Lyrics Alignment: Automatic Retrieval of Song Lyrics
We present an approach to automatically retrieve and extract lyrics of arbitrary songs from the Internet. It is intended to provide easy and convenient access to lyrics for users,...
Peter Knees, Markus Schedl, Gerhard Widmer
BMCBI
2006
92views more  BMCBI 2006»
13 years 7 months ago
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
Background: Jumping alignments have recently been proposed as a strategy to search a given multiple sequence alignment A against a database. Instead of comparing a database sequen...
Anne-Kathrin Schultz, Ming Zhang, Thomas Leitner, ...
BMCBI
2008
84views more  BMCBI 2008»
13 years 7 months ago
DNAAlignEditor: DNA alignment editor tool
Background: With advances in DNA re-sequencing methods and Next-Generation parallel sequencing approaches, there has been a large increase in genomic efforts to define and analyze...
Hector Sanchez-Villeda, Steven G. Schroeder, Sherr...