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BMCBI
2010
223views more  BMCBI 2010»
13 years 5 months ago
MetNetGE: interactive views of biological networks and ontologies
Background: Linking high-throughput experimental data with biological networks is a key step for understanding complex biological systems. Currently, visualization tools for large...
Ming Jia, Suh-Yeon Choi, Dirk Reiners, Eve Syrkin ...
OTM
2010
Springer
13 years 8 months ago
CoMaP: A Cooperative Overlay-Based Mashup Platform
Recently, mashups have emerged as an important class of Web 2.0 collaborative applications. Mashups can be conceived as personalized Web services which aggregate and manipulate dat...
Osama Al-Haj Hassan, Lakshmish Ramaswamy, John A. ...
BMCBI
2006
153views more  BMCBI 2006»
13 years 10 months ago
Automatic document classification of biological literature
Background: Document classification is a wide-spread problem with many applications, from organizing search engine snippets to spam filtering. We previously described Textpresso, ...
David Chen, Hans-Michael Müller, Paul W. Ster...
ISMB
1998
13 years 11 months ago
Advanced Query Mechanisms for Biological Databases
Existing query interfaces for biological databases are either based on fixed forms or textual query languages. Users of a fixed form-based query interface are limited to performin...
I-Min A. Chen, Anthony Kosky, Victor M. Markowitz,...
ISMB
2007
14 years 10 days ago
A Chado case study: an ontology-based modular schema for representing genome-associated biological information
Motivation: A few years ago, FlyBase undertook to design a new database schema to store Drosophila data. It would fully integrate genomic sequence and annotation data with bibliog...
Chris Mungall, David B. Emmert