Approximate string matching problem is a common and often repeated task in information retrieval and bioinformatics. This paper proposes a generic design of a programmable array p...
Panagiotis D. Michailidis, Konstantinos G. Margari...
In recent years, we have witnessed a growing interest in high performance computing (HPC) using a cluster of workstations. However, many challenges remain to be resolved before th...
In this paper we describe a new approach for the well known problem in bioinformatics: Multiple Sequence Alignment (MSA). MSA is fundamental task as it represents an essential pla...
Sampling is a widely used technique to increase efficiency in database and data mining applications operating on large dataset. In this paper we present a scalable sampling imple...
This paper presents the alternatives available to support threadprivate data in OpenMP and evaluates them. We show how current compilation systems rely on custom techniques for im...