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» PARALLEL-TCOFFEE: A parallel multiple sequence aligner

124

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ISCAPDCS
2007

122views Distributed And Parallel Com...» more ISCAPDCS 2007»

PARALLEL-TCOFFEE: A parallel multiple sequence aligner

15 years 5 months ago

Download aluru-sun.ece.iastate.edu

In this paper we present a parallel implementation of T–Coffee — a widely used multiple sequence alignment package. Our software supports a majority of options provided by the...

Jaroslaw Zola, Xiao Yang, Adrian Rospondek, Sriniv...

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110

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ICPP
1995
IEEE

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Parallel Multiple Sequence Alignment Using Speculative Computation

15 years 7 months ago

Download www.dynamics.unam.edu

Tieng K. Yap, Peter J. Munson, Ophir Frieder, Robe...

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127

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IPPS
2009
IEEE

168views Distributed And Parallel Com...» more IPPS 2009»

Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA

15 years 10 months ago

Download www.hicomb.org

Computing large multiple protein sequence alignments using progressive alignment tools such as ClustalW requires several hours on state-of-the-art workstations. ClustalW uses a th...

Yongchao Liu, Bertil Schmidt, Douglas L. Maskell

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105

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BIOCOMP
2006

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Space-Efficient Parallel Algorithms for the Constrained Multiple Sequence Alignment Problem

15 years 4 months ago