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PR
2011
13 years 2 months ago
A sum-over-paths extension of edit distances accounting for all sequence alignments
This paper introduces a simple Sum-over-Paths (SoP) formulation of string edit distances accounting for all possible alignments between two sequences, and extends related previous...
Silvia García-Díez, François ...
SIAMADS
2010
100views more  SIAMADS 2010»
13 years 2 months ago
Optimal Intrinsic Dynamics for Bursting in a Three-Cell Network
Previous numerical and analytical work has shown that synaptic coupling can allow a network of model neurons to synchronize despite heterogeneity in intrinsic parameter values. In ...
Justin R. Dunmyre, Jonathan E. Rubin
SIAMMAX
2010
116views more  SIAMMAX 2010»
13 years 2 months ago
Structured Total Maximum Likelihood: An Alternative to Structured Total Least Squares
Abstract. Linear inverse problems with uncertain measurement matrices appear in many different applications. One of the standard techniques for solving such problems is the total l...
Amir Beck, Yonina C. Eldar
BMCBI
2011
13 years 1 months ago
Properties of Metabolic Graphs: Biological Organization or Representation Artifacts?
Background: Standard graphs, where each edge links two nodes, have been extensively used to represent the connectivity of metabolic networks. It is based on this representation th...
Wanding Zhou, Luay Nakhleh
SIAMJO
2011
12 years 10 months ago
Rank-Sparsity Incoherence for Matrix Decomposition
Suppose we are given a matrix that is formed by adding an unknown sparse matrix to an unknown low-rank matrix. Our goal is to decompose the given matrix into its sparse and low-ran...
Venkat Chandrasekaran, Sujay Sanghavi, Pablo A. Pa...