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HPDC
1993
IEEE
14 years 19 days ago
A Parallel Object-Oriented Framework for Stencil Algorithms
Wepresent an object-oriented framework for constructing parallel implementations of stencil algorithms. This framework simplifres the development process by encapsulating the comm...
John F. Karpovich, Matthew Judd, W. Timothy Straye...
SBACPAD
2007
IEEE
157views Hardware» more  SBACPAD 2007»
14 years 2 months ago
Exploring Novel Parallelization Technologies for 3-D Imaging Applications
Multi-dimensional imaging techniques involve the processing of high resolution images commonly used in medical, civil and remote-sensing applications. A barrier commonly encounter...
Diego Rivera, Dana Schaa, Micha Moffie, David R. K...
ICPP
2003
IEEE
14 years 1 months ago
FastLSA: A Fast, Linear-Space, Parallel and Sequential Algorithm for Sequence Alignment
Pairwise sequence alignment is a fundamental operation for homology search in bioinformatics. For two DNA or protein sequences of length ¢ and £ , full-matrix (FM), dynamic prog...
Adrian Driga, Paul Lu, Jonathan Schaeffer, Duane S...
PPSN
2000
Springer
14 years 2 days ago
Practical Implications of New Results in Conservation of Optimizer Performance
Abstract. Three theoretical perspectives upon conservation of performance in function optimization are outlined. In terms of statistical information, performance is conserved when ...
Thomas M. English
BMCBI
2010
189views more  BMCBI 2010»
13 years 8 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...