Wepresent an object-oriented framework for constructing parallel implementations of stencil algorithms. This framework simplifres the development process by encapsulating the comm...
John F. Karpovich, Matthew Judd, W. Timothy Straye...
Multi-dimensional imaging techniques involve the processing of high resolution images commonly used in medical, civil and remote-sensing applications. A barrier commonly encounter...
Diego Rivera, Dana Schaa, Micha Moffie, David R. K...
Pairwise sequence alignment is a fundamental operation for homology search in bioinformatics. For two DNA or protein sequences of length ¢ and £ , full-matrix (FM), dynamic prog...
Adrian Driga, Paul Lu, Jonathan Schaeffer, Duane S...
Abstract. Three theoretical perspectives upon conservation of performance in function optimization are outlined. In terms of statistical information, performance is conserved when ...
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...