158 search results - page 10 / 32 » Parallel Biological Sequence Comparison Using Prefix Computa... |
ISHPC
2003
Springer
14 years 16 days ago
2003
Springer
We developed a multithreaded parallel implementation of a sequence alignment algorithm that is able to align whole genomes with reliable output and reasonable cost. This paper pres...
BMCBI
2010
13 years 4 months ago
2010
Background: Models for the simulation of metabolic networks require the accurate prediction of enzyme function. Based on a genomic sequence, enzymatic functions of gene products a...
BMCBI
2004
13 years 7 months ago
2004
Background: An important challenge for transcript counting methods such as Serial Analysis of Gene Expression (SAGE), "Digital Northern" or Massively Parallel Signature ...
IPPS
2010
IEEE
13 years 5 months ago
2010
IEEE
The Smith-Waterman (SW) algorithm is one of the widely used algorithms for sequence alignment in computational biology. With the growing size of the sequence database, there is alw...
JCB
2007
13 years 7 months ago
2007
Locality is an important and well-studied notion in comparative analysis of biological sequences. Similarly, taking into account affine gap penalties when calculating biological ...