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IISWC
2006
IEEE
14 years 1 months ago
Performance Analysis of Sequence Alignment Applications
— Recent advances in molecular biology have led to a continued growth in the biological information generated by the scientific community. Additionally, this area has become a m...
Friman Sánchez, Esther Salamí, Alex ...
TC
2010
13 years 5 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
IPPS
2006
IEEE
14 years 1 months ago
FPGA based architecture for DNA sequence comparison and database search
DNA sequence comparison is a computationally intensive problem, known widely since the competition for human DNA decryption. Database search for DNA sequence comparison is of grea...
Euripides Sotiriades, Christos Kozanitis, Apostolo...
ICDE
2004
IEEE
116views Database» more  ICDE 2004»
14 years 8 months ago
An Efficient Algorithm for Mining Frequent Sequences by a New Strategy without Support Counting
Mining sequential patterns in large databases is an important research topic. The main challenge of mining sequential patterns is the high processing cost due to the large amount ...
Ding-Ying Chiu, Yi-Hung Wu, Arbee L. P. Chen
BMCBI
2006
95views more  BMCBI 2006»
13 years 7 months ago
Discrete profile comparison using information bottleneck
Sequence homologs are an important source of information about proteins. Amino acid profiles, representing the position-specific mutation probabilities found in profiles, are a ri...
Sean O'Rourke, Gal Chechik, Robin Friedman, Eleaza...