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» Parallel Computation in Biological Sequence Analysis
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FCS
2006
13 years 9 months ago
Another Algorithm for Computing Longest Common Increasing Subsequence for Two Random Input Sequences
We have previously developed several algorithms which deal with different input sequence scenarios respectively. In this paper, another sequential algorithm for computing Longest ...
Yongsheng Bai, Bob P. Weems
APPT
2007
Springer
13 years 9 months ago
A Parallel BSP Algorithm for Irregular Dynamic Programming
Dynamic programming is a widely applied algorithm design technique in many areas such as computational biology and scientific computing. Typical applications using this technique a...
Malcolm Yoke-Hean Low, Weiguo Liu, Bertil Schmidt
ISB
2002
140views more  ISB 2002»
13 years 7 months ago
Computer system "Gene Discovery" for promoter structure analysis
Data Mining and Knowledge Discovery techniques proved to be efficient tools for variety of complex tasks in biology including DNA research. This paper presents implementation of th...
Eugenii E. Vityaev, Yuri L. Orlov, Oleg V. Vishnev...
IPPS
2003
IEEE
14 years 1 months ago
PROSIDIS: A Special Purpose Processor for PROtein SImilarity DIScovery
This work presents the architecture of PROSIDIS, a special purpose processor designed to search for the occurrence of substrings similar to a given ‘template string’ within a ...
Alessandro Marongiu, Paolo Palazzari, Vittorio Ros...
BMCBI
2008
115views more  BMCBI 2008»
13 years 7 months ago
BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment
Background: Graphs and networks are common analysis representations for biological systems. Many traditional graph algorithms such as k-clique, k-coloring, and subgraph matching h...
George Chin Jr., Daniel G. Chavarría-Mirand...