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» Parallel Computation in Biological Sequence Analysis
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BMCBI
2008
143views more  BMCBI 2008»
13 years 8 months ago
Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering
Background: The identification and study of proteins from metagenomic datasets can shed light on the roles and interactions of the source organisms in their communities. However, ...
Shibu Yooseph, Weizhong Li, Granger G. Sutton
BMCBI
2005
152views more  BMCBI 2005»
13 years 7 months ago
GeneKeyDB: A lightweight, gene-centric, relational database to support data mining environments
Background: The analysis of biological data is greatly enhanced by existing or emerging databases. Most existing databases, with few exceptions are not designed to easily support ...
S. A. Kirov, X. Peng, E. Baker, D. Schmoyer, B. Zh...
SC
1995
ACM
13 years 11 months ago
Parallel Implementations of the Power System Transient Stability Problem on Clusters of Workstations
Power system transient stability analysis computes the response of the rapidly changing electrical components of a power system to a sequence of large disturbances followed by ope...
Monika ten Bruggencate, Suresh Chalasani
ICPP
2009
IEEE
14 years 2 months ago
Generalizing k-Betweenness Centrality Using Short Paths and a Parallel Multithreaded Implementation
We present a new parallel algorithm that extends and generalizes the traditional graph analysis metric of betweenness centrality to include additional non-shortest paths according...
Karl Jiang, David Ediger, David A. Bader
RECOMB
2005
Springer
14 years 8 months ago
Using Multiple Alignments to Improve Gene Prediction
The multiple species de novo gene prediction problem can be stated as follows: given an alignment of genomic sequences from two or more organisms, predict the location and structur...
Samuel S. Gross, Michael R. Brent