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» Parallel Computation in Biological Sequence Analysis
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IPPS
2007
IEEE
14 years 2 months ago
Improved Output Jitter Calculation for Compositional Performance Analysis of Distributed Systems
Compositional performance analysis iteratively alternates local scheduling analysis techniques and output event model propagation between system components to enable performance a...
Rafik Henia, Razvan Racu, Rolf Ernst
ASAP
2000
IEEE
184views Hardware» more  ASAP 2000»
14 years 7 days ago
Tradeoff Analysis and Architecture Design of a Hybrid Hardware/Software Sorter
Sorting long sequences of keys is a problem that occurs in many different applications. For embedded systems, a uniprocessor software solution is often not applicable due to the l...
Marcus Bednara, Oliver Beyer, Jürgen Teich, R...
HIPC
2005
Springer
14 years 1 months ago
Design and Implementation of the HPCS Graph Analysis Benchmark on Symmetric Multiprocessors
Graph theoretic problems are representative of fundamental computations in traditional and emerging scientific disciplines like scientific computing, computational biology and b...
David A. Bader, Kamesh Madduri
IPPS
2009
IEEE
14 years 2 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...
CCGRID
2005
IEEE
14 years 1 months ago
A grid-based system for microbial genome comparison and analysis
Genome comparison and analysis can reveal the structures and functions of genome sequences of different species. As more genomes are sequenced, genomic data sources are rapidly in...
Yudong Sun, Anil Wipat, Matthew R. Pocock, P. A. L...