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» Parallel Computation in Biological Sequence Analysis
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BMCBI
2008
118views more  BMCBI 2008»
13 years 8 months ago
PseudoGeneQuest - Service for identification of different pseudogene types in the human genome
Background: Pseudogenes, nonfunctional copies of genes, evolve fast due the lack of evolutionary pressures and thus appear in several different forms. PseudoGeneQuest is an online...
Csaba P. Ortutay, Mauno Vihinen
RECOMB
2003
Springer
14 years 8 months ago
Modeling dependencies in protein-DNA binding sites
The availability of whole genome sequences and high-throughput genomic assays opens the door for in silico analysis of transcription regulation. This includes methods for discover...
Yoseph Barash, Gal Elidan, Nir Friedman, Tommy Kap...
IPPS
2010
IEEE
13 years 5 months ago
Hybrid MPI/Pthreads parallelization of the RAxML phylogenetics code
Abstract--A hybrid MPI/Pthreads parallelization was implemented in the RAxML phylogenetics code. New MPI code was added to the existing Pthreads production code to exploit parallel...
Wayne Pfeiffer, Alexandros Stamatakis
IPPS
1998
IEEE
14 years 2 days ago
Predicting the Running Times of Parallel Programs by Simulation
Predicting the running time of a parallel program is useful for determining the optimal values for the parameters of the implementation and the optimal mapping of data on processo...
Radu Rugina, Klaus E. Schauser
HPCC
2007
Springer
13 years 11 months ago
A Highly Efficient Parallel Algorithm for H.264 Encoder Based on Macro-Block Region Partition
This paper proposes a highly efficient MBRP parallel algorithm for H.264 encoder, which is based on the analysis of data dependencies in H.264 encoder. In the algorithm, the video ...
Shuwei Sun, Dong Wang, Shuming Chen