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» Parallel Computation in Biological Sequence Analysis
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SC
2009
ACM
14 years 2 months ago
Evaluating use of data flow systems for large graph analysis
Large graph analysis has become increasingly important and is widely used in many applications such as web mining, social network analysis, biology, and information retrieval. The...
Andy Yoo, Ian Kaplan
IPPS
2008
IEEE
14 years 2 months ago
Supporting high performance bioinformatics flat-file data processing using indices
As an essential part of in vitro analysis, biological database query has become more and more important in the research process. A few challenges that are specific to bioinformat...
Xuan Zhang, Gagan Agrawal
BMCBI
2008
132views more  BMCBI 2008»
13 years 8 months ago
The Average Mutual Information Profile as a Genomic Signature
Background: Occult organizational structures in DNA sequences may hold the key to understanding functional and evolutionary aspects of the DNA molecule. Such structures can also p...
Mark Bauer, Sheldon M. Schuster, Khalid Sayood
EDBT
2011
ACM
281views Database» more  EDBT 2011»
12 years 11 months ago
Fast and accurate computation of equi-depth histograms over data streams
Equi-depth histograms represent a fundamental synopsis widely used in both database and data stream applications, as they provide the cornerstone of many techniques such as query ...
Hamid Mousavi, Carlo Zaniolo
CONCUR
2007
Springer
14 years 2 months ago
Rule-Based Modelling of Cellular Signalling
Abstract. Modelling is becoming a necessity in studying biological signalling pathways, because the combinatorial complexity of such systems rapidly overwhelms intuitive and qualit...
Vincent Danos, Jérôme Feret, Walter F...