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HPDC
2010
IEEE
13 years 7 months ago
Towards optimising distributed data streaming graphs using parallel streams
Modern scientific collaborations have opened up the opportunity of solving complex problems that involve multidisciplinary expertise and large-scale computational experiments. The...
Chee Sun Liew, Malcolm P. Atkinson, Jano I. van He...
EUROPAR
2007
Springer
13 years 10 months ago
Fast and Efficient Total Exchange on Two Clusters
Abstract. Total Exchange is one of the most important collective communication patterns for scientific applications. In this paper we propose an algorithm called LG for the total e...
Emmanuel Jeannot, Luiz Angelo Steffenel
ALGORITHMICA
2005
195views more  ALGORITHMICA 2005»
13 years 6 months ago
Bit-Parallel Witnesses and Their Applications to Approximate String Matching
We present a new bit-parallel technique for approximate string matching. We build on two previous techniques. The first one, BPM [Myers, J. of the ACM, 1999], searches for a patte...
Heikki Hyyrö, Gonzalo Navarro
BMCBI
2008
115views more  BMCBI 2008»
13 years 6 months ago
BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment
Background: Graphs and networks are common analysis representations for biological systems. Many traditional graph algorithms such as k-clique, k-coloring, and subgraph matching h...
George Chin Jr., Daniel G. Chavarría-Mirand...
IPPS
1995
IEEE
13 years 10 months ago
Characterizing parallel file-access patterns on a large-scale multiprocessor
High-performance parallel file systems are needed to satisfy tremendous I/O requirements of parallel scientific applications. The design of such high-performance parallel file ...
Apratim Purakayastha, Carla Schlatter Ellis, David...