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GRID
2006
Springer
13 years 7 months ago
Implementation of Fault-Tolerant GridRPC Applications
In this paper, a task parallel application is implemented with Ninf-G which is a GridRPC system, and experimented on, using the Grid testbed in Asia Pacific, for three months. The...
Yusuke Tanimura, Tsutomu Ikegami, Hidemoto Nakada,...
IPPS
1999
IEEE
13 years 11 months ago
Large Scale Simulation of Parallel Molecular Dynamics
This paper aims to describe the implementation of TAKAKAW, an efficient parallel application for the simulation of molecular dynamics designed to handle large proteins in biology....
Pierre-Eric Bernard, Thierry Gautier, Denis Trystr...
FPGA
2004
ACM
174views FPGA» more  FPGA 2004»
14 years 22 days ago
A compiled accelerator for biological cell signaling simulations
The simulation of large systems of biochemical reactions is a key part of research into molecular signaling and information processing in biological cells. However, it can be impr...
John F. Keane, Christopher Bradley, Carl Ebeling
RECOMB
2005
Springer
14 years 7 months ago
Recognition of Binding Patterns Common to a Set of Protein Structures
We present a novel computational method, MultiBind, for recognition of binding patterns common to a set of protein structures. It is the first method which performs a multiple alig...
Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussi...
ICPPW
2008
IEEE
14 years 1 months ago
Replay-Based Synchronization of Timestamps in Event Traces of Massively Parallel Applications
Event traces are helpful in understanding the performance behavior of message-passing applications since they allow in-depth analyses of communication and synchronization patterns...
Daniel Becker, John C. Linford, Rolf Rabenseifner,...