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BMCBI
2010
96views more  BMCBI 2010»
13 years 7 months ago
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
Background: Chromatin immunoprecipitation (ChIP) followed by high-throughput sequencing (ChIP-seq) or ChIP followed by genome tiling array analysis (ChIP-chip) have become standar...
Lihua J. Zhu, Claude Gazin, Nathan D. Lawson, Herv...
ICS
2009
Tsinghua U.
14 years 2 months ago
MPI-aware compiler optimizations for improving communication-computation overlap
Several existing compiler transformations can help improve communication-computation overlap in MPI applications. However, traditional compilers treat calls to the MPI library as ...
Anthony Danalis, Lori L. Pollock, D. Martin Swany,...
HPDC
2007
IEEE
14 years 1 months ago
Failure-aware checkpointing in fine-grained cycle sharing systems
Fine-Grained Cycle Sharing (FGCS) systems aim at utilizing the large amount of idle computational resources available on the Internet. Such systems allow guest jobs to run on a ho...
Xiaojuan Ren, Rudolf Eigenmann, Saurabh Bagchi
HPCC
2007
Springer
14 years 1 months ago
Hybrid Line Search for Multiobjective Optimization
Abstract. The aggregation of objectives in multiple criteria programming is one of the simplest and widely used approach. But it is well known that these techniques sometimes fail ...
Crina Grosan, Ajith Abraham
LCTRTS
2007
Springer
14 years 1 months ago
Tetris: a new register pressure control technique for VLIW processors
The run-time performance of VLIW (very long instruction word) microprocessors depends heavily on the effectiveness of its associated optimizing compiler. Typical VLIW compiler pha...
Weifeng Xu, Russell Tessier