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» Parallel Generation of Pseudo-Random Sequences
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BMCBI
2010
189views more  BMCBI 2010»
13 years 10 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
IISWC
2006
IEEE
14 years 3 months ago
Performance Analysis of Sequence Alignment Applications
— Recent advances in molecular biology have led to a continued growth in the biological information generated by the scientific community. Additionally, this area has become a m...
Friman Sánchez, Esther Salamí, Alex ...
SIGMOD
2009
ACM
161views Database» more  SIGMOD 2009»
14 years 4 months ago
Dependency-aware reordering for parallelizing query optimization in multi-core CPUs
The state of the art commercial query optimizers employ cost-based optimization and exploit dynamic programming (DP) to find the optimal query execution plan (QEP) without evalua...
Wook-Shin Han, Jinsoo Lee
ICPP
2007
IEEE
14 years 4 months ago
Improving Static Task Scheduling in Heterogeneous and Homogeneous Computing Systems
In this paper, we present a heuristic algorithm that improves the performance of static task scheduling. Our algorithm is based on the list-scheduling mechanism. For the listing p...
Chih-Hsueh Yang, PeiZong Lee, Yeh-Ching Chung
BMCBI
2010
132views more  BMCBI 2010»
13 years 10 months ago
Data structures and compression algorithms for high-throughput sequencing technologies
Background: High-throughput sequencing (HTS) technologies play important roles in the life sciences by allowing the rapid parallel sequencing of very large numbers of relatively s...
Kenny Daily, Paul Rigor, Scott Christley, Xiaohui ...