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TC
2010
13 years 8 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
IPPS
2010
IEEE
13 years 8 months ago
Distributed monitoring of conditional entropy for anomaly detection in streams
In this work we consider the problem of monitoring information streams for anomalies in a scalable and efficient manner. We study the problem in the context of network streams wher...
Chrisil Arackaparambil, Sergey Bratus, Joshua Brod...
IPPS
2010
IEEE
13 years 8 months ago
Out-of-core distribution sort in the FG programming environment
We describe the implementation of an out-of-core, distribution-based sorting program on a cluster using FG, a multithreaded programming framework. FG mitigates latency from disk-I/...
Priya Natarajan, Thomas H. Cormen, Elena Riccio St...
IPPS
2010
IEEE
13 years 8 months ago
Scalable failure recovery for high-performance data aggregation
Many high-performance tools, applications and infrastructures, such as Paradyn, STAT, TAU, Ganglia, SuperMon, Astrolabe, Borealis, and MRNet, use data aggregation to synthesize lar...
Dorian C. Arnold, Barton P. Miller
OPODIS
2010
13 years 8 months ago
Biased Selection for Building Small-World Networks
Abstract. Small-world networks are currently present in many distributed applications and can be built augmenting a base network with long-range links using a probability distribut...
Andrés Sevilla, Alberto Mozo, M. Araceli Lo...
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