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IPPS
2006
IEEE
14 years 1 months ago
Parallel implementation of the replica exchange molecular dynamics algorithm on Blue Gene/L
The Replica Exchange method is a popular approach for studying the folding thermodynamics of small to modest size proteins in explicit solvent, since it is easily parallelized. Ho...
Maria Eleftheriou, Aleksandr Rayshubskiy, Jed W. P...
SC
1995
ACM
13 years 11 months ago
Parallel Implementations of the Power System Transient Stability Problem on Clusters of Workstations
Power system transient stability analysis computes the response of the rapidly changing electrical components of a power system to a sequence of large disturbances followed by ope...
Monika ten Bruggencate, Suresh Chalasani
COMPUTING
2006
127views more  COMPUTING 2006»
13 years 7 months ago
PHoMpara - Parallel Implementation of the Polyhedral Homotopy Continuation Method for Polynomial Systems
The polyhedral homotopy continuation method is known to be a successful method for finding all isolated solutions of a system of polynomial equations. PHoM, an implementation of t...
T. Gunji, S. Kim, K. Fujisawa, M. Kojima
ICASSP
2011
IEEE
12 years 11 months ago
The Centered Discrete Fourier Transform and a parallel implementation of the FFT
This paper describes a novel method for the computation of the Discrete Fourier Transform (DFT). The development of a truly centered DFT is coupled with a method for computing the...
Dale H. Mugler
IPPS
2006
IEEE
14 years 1 months ago
Parallel implementation and performance characterization of MUSCLE
Multiple sequence alignment is a fundamental and very computationally intensive task in molecular biology. MUSCLE, a new algorithm for creating multiple alignments of protein sequ...
Xi Deng, Eric Li, Jiulong Shan, Wenguang Chen