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IPPS
1999
IEEE
13 years 11 months ago
Dynamically Scheduling the Trace Produced During Program Execution into VLIW Instructions
VLIW machines possibly provide the most direct way to exploit instruction level parallelism; however, they cannot be used to emulate current general-purpose instruction set archit...
Alberto Ferreira de Souza, Peter Rounce
APVIS
2011
12 years 7 months ago
Loose capacity-constrained representatives for the qualitative visual analysis in molecular dynamics
Molecular dynamics is a widely used simulation technique to investigate material properties and structural changes under external forces. The availability of more powerful cluster...
Steffen Frey, Thomas Schlömer, Sebastian Grot...
SP
2002
IEEE
109views Security Privacy» more  SP 2002»
13 years 7 months ago
Scalable atomistic simulation algorithms for materials research
A suite of scalable atomistic simulation programs has been developed for materials research based on space-time multiresolution algorithms. Design and analysis of parallel algorit...
Aiichiro Nakano, Rajiv K. Kalia, Priya Vashishta, ...
PSB
2001
13 years 9 months ago
A Multithreaded Parallel Implementation of a Dynamic Programming Algorithm for Sequence Comparison
This paper discusses the issues involved in implementing a dynamic programming algorithm for biological sequence comparison on a generalpurpose parallel computing platform based o...
W. S. Martins, Juan del Cuvillo, F. J. Useche, Kev...
IPPS
2008
IEEE
14 years 1 months ago
Overcoming scaling challenges in biomolecular simulations across multiple platforms
NAMD† is a portable parallel application for biomolecular simulations. NAMD pioneered the use of hybrid spatial and force decomposition, a technique now used by most scalable pr...
Abhinav Bhatele, Sameer Kumar, Chao Mei, James C. ...