Dynamic instrumentation systems have proven to be extremely valuable for program introspection, architectural simulation, and bug detection. Yet a major drawback of modern instrum...
We present recent developments in efficiently maintaining the boundary and surface area of protein molecules as they undergo conformational changes. As the method that we devised k...
We present a distributed scheme for initialization from atomic wavefunctions in ab initio molecular dynamics simulations. Good initial guesses for approximate wavefunctions are ve...
Most features in commercial simulation packages are often omitted in parallel simulation benchmarks, because they neither affect the overall correctness of the simulation protocol...
Background: The main aim of this study was to develop and implement an algorithm for the rapid, accurate and automated identification of paths leading from buried protein clefts, ...