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IPPS
1997
IEEE
13 years 11 months ago
Extensible Message Passing Application Development and Debugging with Python
We describe how we have parallelized Python, an interpreted object oriented scripting language, and used it to build an extensible message-passing molecular dynamics application f...
David M. Beazley, Peter S. Lomdahl
SPAA
2006
ACM
14 years 1 months ago
Towards automatic parallelization of tree reductions in dynamic programming
Tree contraction algorithms, whose idea was first proposed by Miller and Reif, are important parallel algorithms to implement efficient parallel programs manipulating trees. Desp...
Kiminori Matsuzaki, Zhenjiang Hu, Masato Takeichi
SAC
2002
ACM
13 years 7 months ago
Statistical properties of the simulated time horizon in conservative parallel discrete-event simulations
We investigate the universal characteristics of the simulated time horizon of the basic conservative parallel algorithm when implemented on regular lattices. This technique [1, 2]...
G. Korniss, M. A. Novotny, A. K. Kolakowska, H. Gu...
WSC
2008
13 years 10 months ago
Parallel discrete-event simulation of population dynamics
Research in parallel simulation has been around for more than two decades. However, the number of papers reporting on its application to real world problems is limited. At the 200...
Bhakti Satyabudhi, Stephan Onggo
BCB
2010
156views Bioinformatics» more  BCB 2010»
13 years 2 months ago
Accelerating HMMER on GPUs by implementing hybrid data and task parallelism
Many biologically motivated problems are expressed as dynamic programming recurrences and are difficult to parallelize due to the intrinsic data dependencies in their algorithms. ...
Narayan Ganesan, Roger D. Chamberlain, Jeremy Buhl...