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IPPS
2003
IEEE
14 years 2 months ago
Task Pool Teams for Implementing Irregular Algorithms on Clusters of SMPs
The characteristics of irregular algorithms make a parallel implementation difficult, especially for PC clusters or clusters of SMPs. These characteristics may include an unpredi...
Judith Hippold, Gudula Rünger
FPGA
2004
ACM
174views FPGA» more  FPGA 2004»
14 years 2 months ago
A compiled accelerator for biological cell signaling simulations
The simulation of large systems of biochemical reactions is a key part of research into molecular signaling and information processing in biological cells. However, it can be impr...
John F. Keane, Christopher Bradley, Carl Ebeling
IPPS
2007
IEEE
14 years 3 months ago
Performance Evaluation of two Parallel Programming Paradigms Applied to the Symplectic Integrator Running on COTS PC Cluster
There are two popular parallel programming paradigms available to high performance computing users such as engineering and physics professionals: message passing and distributed s...
Lorena B. C. Passos, Gerson H. Pfitscher, Tarcisio...
CPHYSICS
2007
80views more  CPHYSICS 2007»
13 years 8 months ago
Development of a parallelized 3D electrostatic PIC-FEM code and its applications
A parallelized three-dimensional self-consistent electrostatic particle-in-cell (PIC) code using unstructured tetrahedral mesh is proposed. Parallel implementation of the current ...
J.-S. Wu, K.-H. Hsu, F.-L. Li, C.-T. Hung, S.-Y. J...
BMCBI
2008
118views more  BMCBI 2008»
13 years 9 months ago
DOVIS: an implementation for high-throughput virtual screening using AutoDock
Background: Molecular-docking-based virtual screening is an important tool in drug discovery that is used to significantly reduce the number of possible chemical compounds to be i...
Shuxing Zhang, Kamal Kumar, Xiaohui Jiang, Anders ...