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JCC
2006
82views more  JCC 2006»
13 years 8 months ago
Monte Carlo simulations of biomolecules: The MC module in CHARMM
: We describe the implementation of a general and flexible Monte Carlo (MC) module for the program CHARMM, which is used widely for modeling biomolecular systems with empirical ene...
Jie Hu, Ao Ma, Aaron R. Dinner
ASPLOS
2012
ACM
12 years 4 months ago
Aikido: accelerating shared data dynamic analyses
Despite a burgeoning demand for parallel programs, the tools available to developers working on shared-memory multicore processors have lagged behind. One reason for this is the l...
Marek Olszewski, Qin Zhao, David Koh, Jason Ansel,...
IPPS
2009
IEEE
14 years 3 months ago
Taking the heat off transactions: Dynamic selection of pessimistic concurrency control
In this paper we investigate feedback-directed dynamic selection between different implementations of atomic blocks. We initially execute atomic blocks using STM with optimistic c...
Nehir Sönmez, Tim Harris, Adrián Crist...
ESCIENCE
2006
IEEE
14 years 2 months ago
A Middleware Framework for Maximum Likelihood Evaluation over Dynamic Grids
We have designed a maximum likelihood fitter using the actor model to distribute the computation over a heterogeneous network. The prototype implementation uses the SALSA program...
Wei-Jen Wang, Kaoutar El Maghraoui, John Cummings,...
EH
1999
IEEE
122views Hardware» more  EH 1999»
14 years 1 months ago
The MorphoSys Dynamically Reconfigurable System-on-Chip
MorphoSys is a system-on-chip which combines a RISC processor with an array of reconfigurable cells. The important features of MorphoSys are coarse-grain granularity, dynamic reco...
Guangming Lu, Hartej Singh, Ming-Hau Lee, Nader Ba...