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PVM
2010
Springer
13 years 7 months ago
PMI: A Scalable Parallel Process-Management Interface for Extreme-Scale Systems
Parallel programming models on large-scale systems require a scalable system for managing the processes that make up the execution of a parallel program. The process-management sys...
Pavan Balaji, Darius Buntinas, David Goodell, Will...
IPPS
2010
IEEE
13 years 7 months ago
Exploring parallelism in short sequence mapping using Burrows-Wheeler Transform
Next-generation high throughput sequencing instruments are capable of generating hundreds of millions of reads in a single run. Mapping those reads to a reference genome is an ext...
Doruk Bozdag, Ayat Hatem, Ümit V. Çata...
MTDT
2003
IEEE
105views Hardware» more  MTDT 2003»
14 years 2 months ago
A Testability-Driven Optimizer and Wrapper Generator for Embedded Memories
Memory cores (especially SRAM cores) used on a system chip usually come from a memory compiler. Commercial memory compilers have their limitation— a large memory may need to be ...
Rei-Fu Huang, Li-Ming Denq, Cheng-Wen Wu, Jin-Fu L...
PAAPP
2006
44views more  PAAPP 2006»
13 years 9 months ago
Revisiting communication code generation algorithms for message-passing systems
In this paper, we investigate algorithms for generating communication code to run on distributedmemory systems. We modify algorithms from previously published work and prove that ...
Clayton S. Ferner
SPAA
2006
ACM
14 years 3 months ago
Towards automatic parallelization of tree reductions in dynamic programming
Tree contraction algorithms, whose idea was first proposed by Miller and Reif, are important parallel algorithms to implement efficient parallel programs manipulating trees. Desp...
Kiminori Matsuzaki, Zhenjiang Hu, Masato Takeichi