Sciweavers

271 search results - page 22 / 55
» Parallel Multiple Sequence Alignment Using Speculative Compu...
Sort
View
TC
2010
15 years 22 days ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
PLDI
2004
ACM
15 years 7 months ago
Min-cut program decomposition for thread-level speculation
With billion-transistor chips on the horizon, single-chip multiprocessors (CMPs) are likely to become commodity components. Speculative CMPs use hardware to enforce dependence, al...
Troy A. Johnson, Rudolf Eigenmann, T. N. Vijaykuma...
BMCBI
2010
153views more  BMCBI 2010»
15 years 1 months ago
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massi
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
Cristian Coarfa, Fuli Yu, Christopher A. Miller, Z...
ICS
2003
Tsinghua U.
15 years 7 months ago
Inferential queueing and speculative push for reducing critical communication latencies
Communication latencies within critical sections constitute a major bottleneck in some classes of emerging parallel workloads. In this paper, we argue for the use of Inferentially...
Ravi Rajwar, Alain Kägi, James R. Goodman
HPDC
2006
IEEE
15 years 8 months ago
Troubleshooting Distributed Systems via Data Mining
Through massive parallelism, distributed systems enable the multiplication of productivity. Unfortunately, increasing the scale of available machines to users will also multiply d...
David A. Cieslak, Douglas Thain, Nitesh V. Chawla