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IPPS
2006
IEEE
15 years 8 months ago
A method to improve structural modeling based on conserved domain clusters
—Homology modeling requires an accurate alignment between a query sequence and its homologs with known three-dimensional (3D) information. Current structural modeling techniques ...
Fa Zhang, Lin Xu, Bo Yuan
WOB
2004
120views Bioinformatics» more  WOB 2004»
15 years 3 months ago
Reconfigurable Systems for Sequence Alignment and for General Dynamic Programming
ABSTRACT. Reconfigurable systolic arrays can be adapted to efficiently resolve a wide spectrum of computational problems; parallelism is naturally explored in systolic arrays and r...
Ricardo P. Jacobi, Mauricio Ayala-Rincón, L...
ICCSA
2003
Springer
15 years 7 months ago
Parallel CLUSTAL W for PC Clusters
This paper presents a parallel version of CLUSTAL W, called pCLUSTAL. In contrast to the commercial SGI parallel Clustal, which requires an expensive shared memory SGI multiprocess...
James Cheetham, Frank K. H. A. Dehne, Sylvain Pitr...
PLDI
2012
ACM
13 years 4 months ago
Effective parallelization of loops in the presence of I/O operations
Software-based thread-level parallelization has been widely studied for exploiting data parallelism in purely computational loops to improve program performance on multiprocessors...
Min Feng, Rajiv Gupta, Iulian Neamtiu
IEEEPACT
1999
IEEE
15 years 6 months ago
Predicated Static Single Assignment
Increases in instruction level parallelism are needed to exploit the potential parallelism available in future wide issue architectures. Predicated execution is an architectural m...
Lori Carter, Beth Simon, Brad Calder, Larry Carter...