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125
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BMCBI
2008
125views more  BMCBI 2008»
15 years 2 months ago
XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data
Background: Advances in automated DNA sequencing technology have accelerated the generation of metagenomic DNA sequences, especially environmental ribosomal RNA gene (rDNA) sequen...
Daniel N. Frank
ESCIENCE
2006
IEEE
15 years 8 months ago
Grid Approach to Embarrassingly Parallel CPU-Intensive Bioinformatics Problems
Bioinformatics algorithms such as sequence alignment methods based on profile-HMM (Hidden Markov Model) are popular but CPU-intensive. If large amounts of data are processed, a s...
Heinz Stockinger, Marco Pagni, Lorenzo Cerutti, La...
129
Voted
ICASSP
2011
IEEE
14 years 6 months ago
Iterative estimation of structures of multiple RNA homologs: Turbofold
TurboFold, an iterative algorithm for estimating the common secondary structures of multiple RNA homologs, is presented. The algorithm is motivated by and has structure and attrib...
Gaurav Sharma, Arif Ozgun Harmanci, David H. Mathe...
162
Voted
CVPR
2009
IEEE
16 years 9 months ago
Learning sign language by watching TV (using weakly aligned subtitles)
The goal of this work is to automatically learn a large number of British Sign Language (BSL) signs from TV broadcasts. We achieve this by using the supervisory information avai...
Patrick Buehler (University of Oxford), Mark Everi...
BMCBI
2011
14 years 6 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes