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EUROPAR
2007
Springer
15 years 8 months ago
Auto-parallelisation of Sieve C++ Programs
We describe an approach to automatic parallelisation of programs written in Sieve C++ (Codeplay’s C++ extension), using the Sieve compiler and runtime system. In Sieve C++, the p...
Alastair F. Donaldson, Colin Riley, Anton Lokhmoto...
134
Voted
IPPS
2009
IEEE
15 years 9 months ago
Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA
Emerging DNA sequencing technologies open up exciting new opportunities for genome sequencing by generating read data with a massive throughput. However, produced reads are signif...
Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang...
101
Voted
ASPLOS
2008
ACM
15 years 4 months ago
Parallelizing security checks on commodity hardware
Speck1 is a system that accelerates powerful security checks on commodity hardware by executing them in parallel on multiple cores. Speck provides an infrastructure that allows se...
Edmund B. Nightingale, Daniel Peek, Peter M. Chen,...
VLSID
1996
IEEE
119views VLSI» more  VLSID 1996»
15 years 6 months ago
Parallel simulated annealing strategies for VLSI cell placement
Simulated annealing based standard cell placement for VLSI designs has long been acknowledged as a compute-intensive process, and as a result several research efforts have been un...
John A. Chandy, Prithviraj Banerjee
92
Voted
BMCBI
2005
94views more  BMCBI 2005»
15 years 2 months ago
A method for finding single-nucleotide polymorphisms with allele frequencies in sequences of deep coverage
Background: The allele frequencies of single-nucleotide polymorphisms (SNPs) are needed to select an optimal subset of common SNPs for use in association studies. Sequence-based m...
Jianmin Wang, Xiaoqiu Huang