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BMCBI
2010
136views more  BMCBI 2010»
13 years 11 months ago
SCPS: a fast implementation of a spectral method for detecting protein families on a genome-wide scale
Background: An important problem in genomics is the automatic inference of groups of homologous proteins from pairwise sequence similarities. Several approaches have been proposed...
Tamás Nepusz, Rajkumar Sasidharan, Alberto ...
IPPS
2002
IEEE
14 years 4 months ago
Parallel EST Clustering
Expressed sequence tags, abbreviated ESTs, are DNA fragments experimentally derived from expressed portions of genes. Clustering of ESTs is essential for gene recognition and unde...
Anantharaman Kalyanaraman, Srinivas Aluru, Suresh ...
IPPS
1999
IEEE
14 years 3 months ago
A Flexible Clustering and Scheduling Scheme for Efficient Parallel Computation
Clustering and scheduling of tasks for parallel implementation is a well researched problem. Several techniques have been presented in the literature to improve performance and re...
S. Chingchit, Mohan Kumar, Laxmi N. Bhuyan
PAMI
2011
13 years 6 months ago
Parallel Spectral Clustering in Distributed Systems
Spectral clustering algorithms have been shown to be more effective in finding clusters than some traditional algorithms such as k-means. However, spectral clustering suffers fro...
Wen-Yen Chen, Yangqiu Song, Hongjie Bai, Chih-Jen ...
ICPPW
2008
IEEE
14 years 5 months ago
Performance Analysis and Optimization of Parallel Scientific Applications on CMP Cluster Systems
Chip multiprocessors (CMP) are widely used for high performance computing. Further, these CMPs are being configured in a hierarchical manner to compose a node in a cluster system....
Xingfu Wu, Valerie E. Taylor, Charles W. Lively, S...