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HPDC
2007
IEEE
14 years 2 months ago
A fast topology inference: a building block for network-aware parallel processing
Adapting to the network is the key to achieving high performance for communication-intensive applications, including scientific computing, data intensive computing, and multicast...
Tatsuya Shirai, Hideo Saito, Kenjiro Taura
TC
2010
13 years 6 months ago
Scalable Node-Level Computation Kernels for Parallel Exact Inference
—In this paper, we investigate data parallelism in exact inference with respect to arbitrary junction trees. Exact inference is a key problem in exploring probabilistic graphical...
Yinglong Xia, Viktor K. Prasanna
SBACPAD
2006
IEEE
148views Hardware» more  SBACPAD 2006»
14 years 1 months ago
Scalable Parallel Implementation of Bayesian Network to Junction Tree Conversion for Exact Inference
We present a scalable parallel implementation for converting a Bayesian network to a junction tree, which can then be used for a complete parallel implementation for exact inferen...
Vasanth Krishna Namasivayam, Animesh Pathak, Vikto...
BMCBI
2010
150views more  BMCBI 2010»
13 years 8 months ago
Evolutionary rates at codon sites may be used to align sequences and infer protein domain function
Background: Sequence alignments form part of many investigations in molecular biology, including the determination of phylogenetic relationships, the prediction of protein structu...
Pierre M. Durand, Scott Hazelhurst, Theresa L. Coe...
BIBM
2007
IEEE
132views Bioinformatics» more  BIBM 2007»
14 years 2 months ago
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
Feng Yue, Jijun Tang