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WABI
2010
Springer
168views Bioinformatics» more  WABI 2010»
13 years 4 months ago
The Complexity of Inferring a Minimally Resolved Phylogenetic Supertree
Abstract. A recursive algorithm by Aho, Sagiv, Szymanski, and Ullman [1] forms the basis for many modern rooted supertree methods employed in Phylogenetics. However, as observed by...
Jesper Jansson, Richard S. Lemence, Andrzej Lingas
BMCBI
2006
116views more  BMCBI 2006»
13 years 7 months ago
Gene annotation and network inference by phylogenetic profiling
Background: Phylogenetic analysis is emerging as one of the most informative computational methods for the annotation of genes and identification of evolutionary modules of functi...
Jie Wu, Zhenjun Hu, Charles DeLisi
BMCBI
2006
125views more  BMCBI 2006»
13 years 7 months ago
Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation
Metabolic networks are naturally represented as directed hypergraphs in such a way that metabolites are nodes and enzyme-catalyzed reactions form (hyper)edges. The familiar operat...
Christian V. Forst, Christoph Flamm, Ivo L. Hofack...
ISMB
1998
13 years 8 months ago
Phylogenetic Inference in Protein Superfamilies: Analysis of SH2 Domains
This workfocuses on the inference of evolutionary relationships in protein superfamilies, and the uses of these relationships to identify keypositions in the structure, to infer a...
Kimmen Sjölander
RECOMB
2001
Springer
14 years 7 months ago
A structural EM algorithm for phylogenetic inference
Nir Friedman, Matan Ninio, Itsik Pe'er, Tal Pupko