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DASFAA
2008
IEEE
168views Database» more  DASFAA 2008»
14 years 2 months ago
SemanticTwig: A Semantic Approach to Optimize XML Query Processing
Twig pattern matching (TPM) is the core operation of XML query processing. Existing approaches rely on either efficient data structures or novel labeling/indexing schemes to reduce...
Zhifeng Bao, Tok Wang Ling, Jiaheng Lu, Bo Chen
VLDB
2007
ACM
147views Database» more  VLDB 2007»
14 years 8 months ago
A General Framework for Modeling and Processing Optimization Queries
An optimization query asks for one or more data objects that maximize or minimize some function over the data set. We propose a general class of queries, model-based optimization ...
Michael Gibas, Ning Zheng, Hakan Ferhatosmanoglu
ICPPW
2009
IEEE
13 years 5 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...
ICDE
1999
IEEE
113views Database» more  ICDE 1999»
14 years 9 months ago
Capability-Sensitive Query Processing on Internet Sources
On the Internet, the limited query-processing capabilities of sources make answering even the simplest queries challenging. In this paper, we present a scheme called GenCompact fo...
Hector Garcia-Molina, Wilburt Labio, Ramana Yernen...
BMCBI
2008
204views more  BMCBI 2008»
13 years 7 months ago
EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarra
Background: Expressed sequence tag (EST) collections are composed of a high number of single-pass, redundant, partial sequences, which need to be processed, clustered, and annotat...
Javier Forment, Francisco Gilabert Villamón...