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IPPS
2007
IEEE
14 years 2 months ago
RAxML-Cell: Parallel Phylogenetic Tree Inference on the Cell Broadband Engine
Computational phylogeny is a challenging application even for the most powerful supercomputers. It is also an ideal candidate for benchmarking emerging multiprocessor architecture...
Filip Blagojevic, Alexandros Stamatakis, Christos ...
IPPS
2008
IEEE
14 years 2 months ago
Reducing the run-time of MCMC programs by multithreading on SMP architectures
The increasing availability of multi-core and multiprocessor architectures provides new opportunities for improving the performance of many computer simulations. Markov Chain Mont...
Jonathan M. R. Byrd, Stephen A. Jarvis, A. H. Bhal...
IPPS
2009
IEEE
14 years 2 months ago
A metascalable computing framework for large spatiotemporal-scale atomistic simulations
A metascalable (or “design once, scale on new architectures”) parallel computing framework has been developed for large spatiotemporal-scale atomistic simulations of materials...
Ken-ichi Nomura, Richard Seymour, Weiqiang Wang, H...
ARC
2012
Springer
317views Hardware» more  ARC 2012»
12 years 3 months ago
A High Throughput FPGA-Based Implementation of the Lanczos Method for the Symmetric Extremal Eigenvalue Problem
Iterative numerical algorithms with high memory bandwidth requirements but medium-size data sets (matrix size ∼ a few 100s) are highly appropriate for FPGA acceleration. This pap...
Abid Rafique, Nachiket Kapre, George A. Constantin...
IPPS
2008
IEEE
14 years 2 months ago
Scaling alltoall collective on multi-core systems
MPI Alltoall is one of the most communication intense collective operation used in many parallel applications. Recently, the supercomputing arena has witnessed phenomenal growth o...
Rahul Kumar, Amith R. Mamidala, Dhabaleswar K. Pan...