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JBCB
2006
60views more  JBCB 2006»
13 years 9 months ago
Efficient Algorithms and Software for Detection of Full-length Ltr Retrotransposons
LTR retrotransposons constitute one of the most abundant classes of repetitive elements in eukaryotic genomes. In this paper, we present a new algorithm for detection of full-leng...
Anantharaman Kalyanaraman, Srinivas Aluru
SPAA
2010
ACM
14 years 2 months ago
Implementing and evaluating nested parallel transactions in software transactional memory
Transactional Memory (TM) is a promising technique that simplifies parallel programming for shared-memory applications. To date, most TM systems have been designed to efficientl...
Woongki Baek, Nathan Grasso Bronson, Christos Kozy...
CG
2008
Springer
13 years 9 months ago
Parallel techniques for physically based simulation on multi-core processor architectures
As multi-core processor systems become more and more widespread, the demand for efficient parallel algorithms also propagates into the field of computer graphics. This is especial...
Bernhard Thomaszewski, Simon Pabst, Wolfgang Bloch...
INFOCOM
2007
IEEE
14 years 4 months ago
TriBiCa: Trie Bitmap Content Analyzer for High-Speed Network Intrusion Detection
Abstract—Deep packet inspection (DPI) is often used in network intrusion detection and prevention systems (NIDPS), where incoming packet payloads are compared against known attac...
N. Sertac Artan, H. Jonathan Chao
IPPS
1999
IEEE
14 years 1 months ago
A Graph Based Framework to Detect Optimal Memory Layouts for Improving Data Locality
In order to extract high levels of performance from modern parallel architectures, the effective management of deep memory hierarchies is very important. While architectural advan...
Mahmut T. Kandemir, Alok N. Choudhary, J. Ramanuja...