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» Parallel Tree Projection Algorithm for Sequence Mining
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VLDB
2001
ACM
139views Database» more  VLDB 2001»
13 years 12 months ago
NetCube: A Scalable Tool for Fast Data Mining and Compression
We propose an novel method of computing and storing DataCubes. Our idea is to use Bayesian Networks, which can generate approximate counts for any query combination of attribute v...
Dimitris Margaritis, Christos Faloutsos, Sebastian...
SSDBM
2010
IEEE
220views Database» more  SSDBM 2010»
13 years 11 months ago
Prefix Tree Indexing for Similarity Search and Similarity Joins on Genomic Data
Similarity search and similarity join on strings are important for applications such as duplicate detection, error detection, data cleansing, or comparison of biological sequences....
Astrid Rheinländer, Martin Knobloch, Nicky Ho...
BMCBI
2006
95views more  BMCBI 2006»
13 years 7 months ago
A quantitative analysis of secondary RNA structure using domination based parameters on trees
Background: It has become increasingly apparent that a comprehensive database of RNA motifs is essential in order to achieve new goals in genomic and proteomic research. Secondary...
Teresa W. Haynes, Debra J. Knisley, Edith Seier, Y...
PPOPP
2010
ACM
14 years 4 months ago
Structure-driven optimizations for amorphous data-parallel programs
Irregular algorithms are organized around pointer-based data structures such as graphs and trees, and they are ubiquitous in applications. Recent work by the Galois project has pr...
Mario Méndez-Lojo, Donald Nguyen, Dimitrios...
BMCBI
2006
108views more  BMCBI 2006»
13 years 7 months ago
RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits
Background: Until today, analysis of 16S ribosomal RNA (rRNA) sequences has been the de-facto gold standard for the assessment of phylogenetic relationships among prokaryotes. How...
Hanno Teeling, Frank Oliver Glöckner