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IPPS
2005
IEEE
14 years 9 days ago
RC-BLAST: Towards a Portable, Cost-Effective Open Source Hardware Implementation
Basic Local Alignment Search Tool (BLAST) is a standard computer application that molecular biologists use to search for sequence similarity in genomic databases. This report desc...
Krishna Muriki, Keith D. Underwood, Ron Sass
VLSISP
2008
173views more  VLSISP 2008»
13 years 6 months ago
Fast Bit Gather, Bit Scatter and Bit Permutation Instructions for Commodity Microprocessors
Advanced bit manipulation operations are not efficiently supported by commodity word-oriented microprocessors. Programming tricks are typically devised to shorten the long sequence...
Yedidya Hilewitz, Ruby B. Lee
MM
2005
ACM
215views Multimedia» more  MM 2005»
14 years 8 days ago
OpenVIDIA: parallel GPU computer vision
Graphics and vision are approximate inverses of each other: ordinarily Graphics Processing Units (GPUs) are used to convert “numbers into pictures” (i.e. computer graphics). I...
James Fung, Steve Mann
CDES
2008
123views Hardware» more  CDES 2008»
13 years 8 months ago
R-tree: A Hardware Implementation
R-tree data structures are widely used in spatial databases to store, manage and manipulate spatial information. As the data volume of such databases is typically very large, the q...
Xiang Xiao, Tuo Shi, Pranav Vaidya, Jaehwan John L...
IPPS
2006
IEEE
14 years 22 days ago
Parallel implementation of the replica exchange molecular dynamics algorithm on Blue Gene/L
The Replica Exchange method is a popular approach for studying the folding thermodynamics of small to modest size proteins in explicit solvent, since it is easily parallelized. Ho...
Maria Eleftheriou, Aleksandr Rayshubskiy, Jed W. P...