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» Parallel algorithms for indefinite linear systems
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ICPPW
2009
IEEE
13 years 6 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...
ISPDC
2005
IEEE
14 years 2 months ago
A Distributed Prime Sieving Algorithm based on Scheduling by Multiple Edge Reversal
Abstract— In this article, we propose a fully distributed algorithm for finding all primes in an given interval [2..n] (or (L, R), more generally), based on the SMER — Schedul...
Gabriel Paillard, Christian Antoine Louis Lavault,...
BMCBI
2010
176views more  BMCBI 2010»
13 years 8 months ago
Reverse engineering gene regulatory network from microarray data using linear time-variant model
nd: Gene regulatory network is an abstract mapping of gene regulations in living cells that can help to predict the system behavior of living organisms. Such prediction capability...
Mitra Kabir, Nasimul Noman, Hitoshi Iba
EUROPAR
2011
Springer
12 years 8 months ago
A Fully Empirical Autotuned Dense QR Factorization for Multicore Architectures
: Tuning numerical libraries has become more difficult over time, as systems get more sophisticated. In particular, modern multicore machines make the behaviour of algorithms hard ...
Emmanuel Agullo, Jack Dongarra, Rajib Nath, Stanim...
PVM
2004
Springer
14 years 1 months ago
A Refinement Strategy for a User-Oriented Performance Analysis
We introduce a refinement strategy to bring the parallel performance analysis closer to the user. The analysis starts with a simple high-level performance model. It is based on fir...
Jan Lemeire, Andy Crijns, John Crijns, Erik F. Dir...