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PLDI
2010
ACM
14 years 2 months ago
Supporting speculative parallelization in the presence of dynamic data structures
The availability of multicore processors has led to significant interest in compiler techniques for speculative parallelization of sequential programs. Isolation of speculative s...
Chen Tian, Min Feng, Rajiv Gupta
WSC
1998
13 years 11 months ago
Parallel Implementation of a Molecular Dynamics Simulation Program
We have taken a NIST molecular dynamics simulation program (md3), which was configured as a single sequential process running on a CRAY C90 vector supercomputer, and parallelized ...
Alan Mink, Christophe Bailly
HPDC
2010
IEEE
13 years 10 months ago
Cloud computing paradigms for pleasingly parallel biomedical applications
Cloud computing offers new approaches for scientific computing that leverage the major commercial hardware and software investment in this area. Closely coupled applications are s...
Thilina Gunarathne, Tak-Lon Wu, Judy Qiu, Geoffrey...
BMCBI
2010
189views more  BMCBI 2010»
13 years 9 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
CCGRID
2010
IEEE
13 years 7 months ago
Low-Cost Tuning of Two-Step Algorithms for Scheduling Mixed-Parallel Applications onto Homogeneous Clusters
Due to the strong increase of processing units available to the end user, expressing parallelism of an algorithm is a major challenge for many researchers. Parallel applications ar...
Sascha Hunold