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143
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IPPS
2007
IEEE
15 years 8 months ago
Reconfigurable Architecture for Biological Sequence Comparison in Reduced Memory Space
DNA sequence alignment is a very important problem in bioinformatics. The algorithm proposed by Smith-Waterman (SW) is an exact method that obtains optimal local alignments in qua...
Azzedine Boukerche, Jan Mendonca Correa, Alba Cris...
137
Voted
IPPS
2007
IEEE
15 years 8 months ago
A Comprehensive Analysis of OpenMP Applications on Dual-Core Intel Xeon SMPs
Hybrid chip multithreaded SMPs present new challenges as well as new opportunities to maximize performance. Our intention is to discover the optimal operating configuration of suc...
Ryan E. Grant, Ahmad Afsahi
121
Voted
IPPS
2007
IEEE
15 years 8 months ago
Securing Grid Data Transfer Services with Active Network Portals
Widely available and utilized Grid servers are vulnerable to a variety of threats from Denial of Service (DoS) attacks, overloading caused by flash crowds, and compromised client ...
Onur Demir, Michael R. Head, Kanad Ghose, Madhusud...
108
Voted
IPPS
2007
IEEE
15 years 8 months ago
Improving MPI Independent Write Performance Using A Two-Stage Write-Behind Buffering Method
Many large-scale production applications often have very long executions times and require periodic data checkpoints in order to save the state of the computation for program rest...
Wei-keng Liao, Avery Ching, Kenin Coloma, Alok N. ...
IPPS
2007
IEEE
15 years 8 months ago
Scalable, Distributed, Dynamic Resource Management for the ARMS Distributed Real-Time Embedded System
We present a scalable, hierarchical control system for the dynamic resource management of a distributed real-time embedded (DRE) system. This DRE is inspired by the DARPA Adaptive...
Kurt Rohloff, Yarom Gabay, Jianming Ye, Richard E....