321 search results - page 1 / 65 » Parallel genomic sequence-search on a massively parallel sys... |
146
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CF
2007
ACM
15 years 6 months ago
2007
ACM
In the life sciences, genomic databases for sequence search have been growing exponentially in size. As a result, faster sequencesearch algorithms to search these databases contin...
141
Voted
CLUSTER
2003
IEEE
15 years 7 months ago
2003
IEEE
In this paper we analyze the I/O access patterns of a widely-used biological sequence search tool and implement two variations that employ parallel-I/O for data access based on PV...
127
Voted
HPDC
2006
IEEE
15 years 8 months ago
2006
IEEE
Parallel sequence-search tools are rising in popularity among computational biologists. With the rapid growth of sequence databases, database segmentation is the trend of the futu...
141
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BMCBI
2010
15 years 2 months ago
2010
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
150
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IPPS
2010
IEEE
14 years 11 months ago
2010
IEEE
Abstract--With the development of high-performance computing, I/O issues have become the bottleneck for many massively parallel applications. This paper investigates scalable paral...