321 search results - page 1 / 65 » Parallel genomic sequence-search on a massively parallel sys... |
CF
2007
ACM
14 years 2 months ago
2007
ACM
In the life sciences, genomic databases for sequence search have been growing exponentially in size. As a result, faster sequencesearch algorithms to search these databases contin...
CLUSTER
2003
IEEE
14 years 4 months ago
2003
IEEE
In this paper we analyze the I/O access patterns of a widely-used biological sequence search tool and implement two variations that employ parallel-I/O for data access based on PV...
HPDC
2006
IEEE
14 years 4 months ago
2006
IEEE
Parallel sequence-search tools are rising in popularity among computational biologists. With the rapid growth of sequence databases, database segmentation is the trend of the futu...
BMCBI
2010
13 years 10 months ago
2010
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
IPPS
2010
IEEE
13 years 8 months ago
2010
IEEE
Abstract--With the development of high-performance computing, I/O issues have become the bottleneck for many massively parallel applications. This paper investigates scalable paral...