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ISHPC
2003
Springer
14 years 2 months ago
Performance Study of a Whole Genome Comparison Tool on a Hyper-Threading Multiprocessor
We developed a multithreaded parallel implementation of a sequence alignment algorithm that is able to align whole genomes with reliable output and reasonable cost. This paper pres...
Juan del Cuvillo, Xinmin Tian, Guang R. Gao, Milin...
HPDC
2007
IEEE
14 years 3 months ago
Direct-pNFS: scalable, transparent, and versatile access to parallel file systems
Grid computations require global access to massive data stores. To meet this need, the GridNFS project aims to provide scalable, high-performance, transparent, and secure wide-are...
Dean Hildebrand, Peter Honeyman
JPDC
2006
123views more  JPDC 2006»
13 years 8 months ago
Data redistribution and remote method invocation for coupled components
With the increasing availability of high-performance massively parallel computer systems, the prevalence of sophisticated scientific simulation has grown rapidly. The complexity o...
Felipe Bertrand, Randall Bramley, David E. Bernhol...
IEEEHPCS
2010
13 years 7 months ago
Scalable instruction set simulator for thousand-core architectures running on GPGPUs
Simulators are still the primary tools for development and performance evaluation of applications running on massively parallel architectures. However, current virtual platforms a...
Shivani Raghav, Martino Ruggiero, David Atienza, C...
IPPS
2008
IEEE
14 years 3 months ago
Impact of multicores on large-scale molecular dynamics simulations
Processing nodes of the Cray XT and IBM Blue Gene Massively Parallel Processing (MPP) systems are composed of multiple execution units, sharing memory and network subsystems. Thes...
Sadaf R. Alam, Pratul K. Agarwal, Scott S. Hampton...