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SIGMOD
2007
ACM
179views Database» more  SIGMOD 2007»
14 years 9 months ago
How to barter bits for chronons: compression and bandwidth trade offs for database scans
Two trends are converging to make the CPU cost of a table scan a more important component of database performance. First, table scans are becoming a larger fraction of the query p...
Allison L. Holloway, Vijayshankar Raman, Garret Sw...
ICCS
2009
Springer
14 years 3 months ago
GPU Accelerated RNA Folding Algorithm
Many bioinformatics studies require the analysis of RNA or DNA structures. More specifically, extensive work is done to elaborate efficient algorithms able to predict the 2-D fold...
Guillaume Rizk, Dominique Lavenier
CBMS
2005
IEEE
14 years 2 months ago
A High-Throughput Bioinformatics Distributed Computing Platform
In the past number of years the demand for high performance computing has greatly increased in the area of bioinformatics. The huge increase in size of many genomic databases has ...
Thomas M. Keane, Andrew J. Page, James O. McInerne...
IPPS
2007
IEEE
14 years 3 months ago
Software and Algorithms for Graph Queries on Multithreaded Architectures
Search-based graph queries, such as finding short paths and isomorphic subgraphs, are dominated by memory latency. If input graphs can be partitioned appropriately, large cluster...
Jonathan W. Berry, Bruce Hendrickson, Simon Kahan,...
ICPP
2006
IEEE
14 years 2 months ago
Data Sharing Pattern Aware Scheduling on Grids
These days an increasing number of applications, especially in science and engineering, are dealing with a massive amount of data; hence they are dataintensive. Bioinformatics, da...
Young Choon Lee, Albert Y. Zomaya